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USER’S MANUAL
Revision 1.0
SuperStorage System
5049P-E1CTR36L
The information in this User’s Manual has been carefully reviewed and is believed to be accurate. The vendor assumes
no responsibility for any inaccuracies that may be contained in this document, and makes no commitment to update
or to keep current the information in this manual, or to notify any person or organization of the updates. Please Note:
For the most up-to-date version of this manual, please see our website at www.supermicro.com.
Super Micro Computer, Inc. ("Supermicro") reserves the right to make changes to the product described in this manual
at any time and without notice. This product, including software and documentation, is the property of Supermicro and/
or its licensors, and is supplied only under a license. Any use or reproduction of this product is not allowed, except
as expressly permitted by the terms of said license.
IN NO EVENT WILL Super Micro Computer, Inc. BE LIABLE FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL,
SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE OR INABILITY TO USE THIS PRODUCT
OR DOCUMENTATION, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. IN PARTICULAR, SUPER
MICRO COMPUTER, INC. SHALL NOT HAVE LIABILITY FOR ANY HARDWARE, SOFTWARE, OR DATA STORED
OR USED WITH THE PRODUCT, INCLUDING THE COSTS OF REPAIRING, REPLACING, INTEGRATING,
INSTALLING OR RECOVERING SUCH HARDWARE, SOFTWARE, OR DATA.
Any disputes arising between manufacturer and customer shall be governed by the laws of Santa Clara County in the
State of California, USA. The State of California, County of Santa Clara shall be the exclusive venue for the resolution
of any such disputes. Supermicro's total liability for all claims will not exceed the price paid for the hardware product.
FCC Statement: This equipment has been tested and found to comply with the limits for a Class A digital device
pursuant to Part 15 of the FCC Rules. These limits are designed to provide reasonable protection against harmful
interference when the equipment is operated in a commercial environment. This equipment generates, uses, and can
radiate radio frequency energy and, if not installed and used in accordance with the manufacturer’s instruction manual,
may cause harmful interference with radio communications. Operation of this equipment in a residential area is likely
to cause harmful interference, in which case you will be required to correct the interference at your own expense.
California Best Management Practices Regulations for Perchlorate Materials: This Perchlorate warning applies only
to products containing CR (Manganese Dioxide) Lithium coin cells. “Perchlorate Material-special handling may apply.
See ”.www.dtsc.ca.gov/hazardouswaste/perchlorate
WARNING: Handling of lead solder materials used in this product may expose you to lead, a
chemical known to the State of California to cause birth defects and other reproductive harm.
The products sold by Supermicro are not intended for and will not be used in life support systems, medical equipment,
nuclear facilities or systems, aircraft, aircraft devices, aircraft/emergency communication devices or other critical
systems whose failure to perform be reasonably expected to result in signicant injury or loss of life or catastrophic
property damage. Accordingly, Supermicro disclaims any and all liability, and should buyer use or sell such products
for use in such ultra-hazardous applications, it does so entirely at its own risk. Furthermore, buyer agrees to fully
indemnify, defend and hold Supermicro harmless for and against any and all claims, demands, actions, litigation, and
proceedings of any kind arising out of or related to such ultra-hazardous use or sale.
Manual Revision 1.0
Release Date: August 04, 2017
Unless you request and receive written permission from Super Micro Computer, Inc., you may not copy any part of this
document. Information in this document is subject to change without notice. Other products and companies referred
to herein are trademarks or registered trademarks of their respective companies or mark holders.
Copyright © 2017 by Super Micro Computer, Inc.
All rights reserved.
Printed in the United States of America
33
SuperStorageSystem 5049P-E1CTR36L User's Manual
Preface
About this Manual
This manual is written for professional system integrators and PC technicians. It provides
information for the installation and use of the SuperServer 5049P-E1CTR36L. Installation and
maintenance should be performed by experienced technicians only.
Please refer to the 5049P-E1CTR36L server specications page on our website for updates
on supported memory, processors and operating systems (http://www.supermicro.com).
Notes
For your system to work properly, please follow the links below to download all necessary
drivers/utilities and the user’s manual for your server.
• Supermicro product manuals: http://www.supermicro.com/support/manuals/
• Product drivers and utilities: ftp://ftp.supermicro.com
• Product safety info: http://www.supermicro.com/about/policies/safety_information.cfm
If you have any questions, please contact our support team at:
support@supermicro.com
This manual may be periodically updated without notice. Please check the Supermicro website
for possible updates to the manual revision level.
Warnings
Special attention should be given to the following symbols used in this manual.
Warning! Indicates high voltage may be encountered when performing a procedure.
Warning! Indicates important information given to prevent equipment/property damage
or personal injury.
4
Preface
Contents
Chapter 1 Introduction
1.1 Overview ...............................................................................................................................8
1.2 Unpacking the System .........................................................................................................8
1.3 System Features ..................................................................................................................9
1.4 Server Chassis Features ....................................................................................................10
Control Panel ....................................................................................................................10
Front Features ...................................................................................................................11
Rear Features ...................................................................................................................12
1.5 Motherboard Layout ...........................................................................................................13
Quick Reference Table ......................................................................................................14
Chapter 2 Server Installation
2.1 Overview .............................................................................................................................17
2.2 Preparing for Setup ............................................................................................................17
Choosing a Setup Location ...............................................................................................17
Rack Precautions ..............................................................................................................17
Server Precautions ............................................................................................................18
Rack Mounting Considerations .........................................................................................18
Ambient Operating Temperature ....................................................................................18
Airow ............................................................................................................................18
Mechanical Loading .......................................................................................................18
Circuit Overloading ........................................................................................................19
Reliable Ground .............................................................................................................19
2.3 Installing the System into a Rack.......................................................................................20
Identifying the Sections of the Rack Rails ........................................................................20
Installing the Inner Rails ...................................................................................................20
Releasing the Inner Rails ..................................................................................................21
Installing The Inner Rails on the Chassis .........................................................................22
Installing the Outer Rails on the Rack ..............................................................................23
Chapter 3 Maintenance and Component Installation
3.1 Removing Power ................................................................................................................25
3.2 Accessing the System ........................................................................................................25
3.3 Motherboard Components ..................................................................................................26
Processor and Heatsink Installation ..................................................................................26
5
SuperStorageSystem 5049P-E1CTR36L User's Manual
The Xeon Scalable Processor .......................................................................................27
Overview of the Processor Socket Assembly ................................................................27
Overview of the Processor Heatsink Module (PHM) .....................................................29
Assembling the Processor Package ..............................................................................30
Assembling the Processor Heatsink Module (PHM) .....................................................32
Removing the Processor Heatsink Module from the Motherboard ...............................33
Installing Memory ..............................................................................................................34
Memory Support ............................................................................................................34
DIMM Installation ..............................................................................................................35
DIMM Removal .................................................................................................................35
Installing PCI Expansion Cards ........................................................................................36
Motherboard Battery .........................................................................................................36
3.4 Chassis Components .........................................................................................................37
Hard Drives .......................................................................................................................37
Hard Drive Backplane .......................................................................................................38
Installing Optional Fixed Hard Drives ...........................................................................38
System Cooling .................................................................................................................39
System Fan Failure .......................................................................................................39
Air Shroud ......................................................................................................................40
Power Supply ....................................................................................................................41
Power Supply Failure ....................................................................................................41
Chapter 4 Motherboard Connections
4.1 Power Connections ............................................................................................................43
4.2 Headers and Connectors ...................................................................................................44
Control Panel .................................................................................................................48
4.3 Ports ...................................................................................................................................53
Unit Identier Switch/Rear LED Indicator ......................................................................55
4.4 Jumpers ..............................................................................................................................55
Explanation of Jumpers .................................................................................................55
4.5 LED Indicators ....................................................................................................................58
6
Preface
Chapter 5 Software
5.1 OS Installation ....................................................................................................................60
Installing the Windows OS for a RAID System ................................................................60
Installing Windows to a Non-RAID System ......................................................................60
5.2 Driver Installation ................................................................................................................61
5.3 SuperDoctor® 5 ...................................................................................................................62
5.4 IPMI ....................................................................................................................................63
Chapter 6 BIOS
6.1 Introduction .........................................................................................................................64
6.2 Main Setup .........................................................................................................................65
6.3 Advanced Setup Congurations .........................................................................................67
6.4 Event Logs .........................................................................................................................93
6.5 IPMI ................................................................................................................................... 95
6.6 Security ...............................................................................................................................98
6.7 Boot ..................................................................................................................................102
6.8 Save & Exit .......................................................................................................................105
Appendix A BIOS Codes
Appendix B Standardized Warning Statements for AC Systems
Appendix C System Specications
Appendix D UEFI BIOS Recovery
7
Contacting Supermicro
Headquarters
Address: Super Micro Computer, Inc.
980 Rock Ave.
San Jose, CA 95131 U.S.A.
Tel: +1 (408) 503-8000
Fax: +1 (408) 503-8008
Email: marketing@supermicro.com (General Information)
support@supermicro.com (Technical Support)
Website: www.supermicro.com
Europe
Address: Super Micro Computer B.V.
Het Sterrenbeeld 28, 5215 ML
's-Hertogenbosch, The Netherlands
Tel: +31 (0) 73-6400390
Fax: +31 (0) 73-6416525
Email: sales@supermicro.nl (General Information)
support@supermicro.nl (Technical Support)
rma@supermicro.nl (Customer Support)
Website: www.supermicro.nl
Asia-Pacic
Address: Super Micro Computer, Inc.
3F, No. 150, Jian 1st Rd.
Zhonghe Dist., New Taipei City 235
Taiwan (R.O.C)
Tel: +886-(2) 8226-3990
Fax: +886-(2) 8226-3992
Email: support@supermicro.com.tw
Website: www.supermicro.com.tw
SuperStorageSystem 5049P-E1CTR36L User's Manual
8
SuperStorageSystem 5049P-E1CTR36L User's Manual
Chapter 1
Introduction
1.1 Overview
This chapter provides a brief outline of the functions and features of the 5049P-E1CTR36L. The
5049P-E1CTR36L is based on the X11SPH-NCTF motherboard and the SC847BE1C-R1K23LPB
chassis.
In addition to the motherboard and chassis, several important parts that are included with
the system are listed below.
1.2 Unpacking the System
Inspect the box the SuperServer 5049P-E1CTR36L was shipped in and note if it was damaged
in any way. If any equipment appears damaged, please le a damage claim with the carrier
who delivered it.
Decide on a suitable location for the rack unit that will hold the server. It should be situated
in a clean, dust-free area that is well ventilated. Avoid areas where heat, electrical noise and
electromagnetic elds are generated. It will also require a grounded AC power outlet nearby.
Be sure to read the precautions and considerations noted in Appendix B.
Main Parts List
Description QuantityPart Number
Air Shroud 1 eachMCP-310-49004-0N/MCP-310-82603-0B
Heatsink SNK-P0068PS 1
Hard Drive Backplane 1 eachBPN-SAS3-826EL1/BPN-SAS3-846EL1
Hot-swap Hard Drive Trays MCP-220-00075-0B 36
System Fans FAN-0158L4 7
External Cable Adapter for 8-port Mini SAS Drives AOM-SAS3-818E-LP 1
Rack Rail Mounting Kit MCP-290-00057-0N 1
9
Chapter 1: Introduction
1.3 System Features
The following table provides you with an overview of the main features of the 5049P-E1CTR36L.
Please refer to Appendix C for additional specications.
System Features
Motherboard
X11SPH-NCTF
Chassis
SC847BE1C-R1K23LPB
CPU
Intel Xeon 81xx/61xx/51xx/41xx/31xx series processor* [Socket P0-LGA 3647 processor with up to 28 cores and
a thermal design power (TDP) of up to 205W]
Socket Type
P0-LGA 3647
Memory
Eight DIMM slots to support up to 256GB of RDIMM, 512GB of LRDIMM, and 1TB of 3DS LRDIMM DDR4-2666
(288-pin) ECC memory
Chipset
Intel C622 chipset
Expansion Slots
One PCI Express 3.0 p9-x4 (in x8) Slot
Two PCI Express 3.0 x8 Slots
One PCI Express 3.0 x16 Slot
Hard Drives
Thirty-six 3.5" hard drives in hot-swap drive carriers
Power
Dual (redundant) 1200W power supply modules (p/n PWS-1K23A-1R)
Form Factor
4U rackmount
Dimensions
(WxHxD) 17.2 x 7 x 27.5 in. (437 x 178 x 699 mm)
*Note: Does not support FPGA or Fabric processors.
11
Chapter 1: Introduction
Front Chassis Features
Item Feature Description
1 Control Panel Front control panel with LEDs and buttons (see preceding page)
2 Hard Drive Carrier Carrier for hot-swap hard drive
3 Rack Ear Brackets Secures the server chassis to the rack
Figure 1-2. Chassis Front View
Front Features
The SC847BE1C-R1K23LPB is a 4U chassis See the illustration below for the features
included on the front of the chassis.
1
3 3
2
2
2
2
2
2
2
2
2
2
2
2
22
22
22
22
22
22
12
SuperStorageSystem 5049P-E1CTR36L User's Manual
Figure 1-3. Chassis Rear View
Rear Features
The illustration below shows the features included on the rear of the chassis.
Rear Chassis Features
Item Feature Description
1 Power Supply 1200W power supply module (two modules for power redundancy)
2 I/O Back Panel Rear I/O ports (see Section 4.3)
3 Expansion Card Slots Slots for four expansion cards
4 Hard Drive Carrier Carrier for hot-swap hard drive
5 Rack Ear Brackets Secures the server chassis to the rack
1
1
55
44 4 4
44 4 4
44 4 4
3 3 3 3 3 3 32
13
Chapter 1: Introduction
Figure 1-4. Motherboard Layout
1.5 Motherboard Layout
Below is a layout of the X11SPH-NCTF with jumper, connector and LED locations shown. See
the table on the following page for descriptions. For detailed descriptions, pinout information
and jumper settings, refer to Chapter 4.
IPMI CODE
MAC CODE
SAS CODE
SAN MAC
X11SPH-NCTPF/-NCTF
REV:1.01
DESIGNED IN USA
1
1
1
1
1
1
1
1
JPSAS1
Intel
C622
LSI
3008
Aspeed
AST2500
Inphi
CS4227
(-NCTPF)
Intel
X557
(-NCTF)
M.2 PCI-E 3.0 X4 DLE1
LEDSAS
JNVME1
JNVME2
JPWR1
JTPM1JRK1
SP1
LEDBMC
JL1
JBT1
JSTBY1
JSD2
JPS1
PME2 JWD1
JVRM1
JP4
JPG1
JIPMB1 JNVI2C1
FANB FANA FAN3FAN4 FAN2
FANC
CPU FAN1
FAN5
JD1
S-SGPIO1
JP2
JP3
S-SATA0 S-SATA1
JF1
JPWR2
JSD1
LEDPWR
USB2/3
I-SATA 4-7I-SATA 0-3
L-SAS0-7
IPMI_LAN
COM2 USB11/12(3.0)
PCH SLOT2 PCI-E 3.0 X4(in x8)
CPU SLOT3 PCI-E 3.0 X8
CPU SLOT5 PCI-E 3.0 X8
CPU SLOT6 PCI-E 3.0 X16
USB4/5 USB6/7
USB8(3.0)
UI D-SW
UI D-L ED
1 ONPWRPSFAIL RSTUIDLED1NIC 2NICDDEDX PWRLEDNM I
DIMMC1
DIMMA1
DIMMB1
VGA
DIMMA2
JLAN1: LAN3/4
(-NCTF)
SFP1: LAN1/2
(-NCTPF)
USB9/10(3.0)
DIMMD1
DIMMD2
CPU
DIMMF1
DIMME1
USB0/1
COM1
JPI2C1
JOH1
1
BT1
IPMI_LAN
USB0/1
USB9/10 (3.0)
JLAN1:
LAN3/4
(-NCTF)
COM1
VGA
UID-LED
FAN5
CPU FAN1
FAN2
FAN3
USB2/3 DIMMC1
DIMMA2
DIMMB1
DIMMA1
JPG1
JSD2
JD1
JL1
JTPM1
S-SATA1
JPWR2
JOH1
I-SATA0-3
UID-SW
SLOT6
DIMMD2
DIMMF1
DIMMD1
DIMME1
FAN4
SLOT5
SLOT3
SLOT2
COM2
SP1
LEDBMC
JWD1
JNVME1
FANC
BT1
S-SGPIO1
S-SATA0
JPME2
JPS1
USB4/5
USB6/7
USB11/12 (3.0)
I-SATA4-7
L-SAS0-7
JNVME2
FANB FANA
JPSAS1
LEDSAS
JPWR1
JPI2C1
JNVI2C1
JIPMB1
JVRM1
JSTBY1
USB8 (3.0)
JBT1
JRK1
JSD1
M.2
JF1
LEDPWR
DLE1
Note: the X11SPH-NCTF shares the same layout as the motherboard pictured but does not
include the LAN1 and LAN2 ports.
14
SuperStorageSystem 5049P-E1CTR36L User's Manual
Quick Reference Table
Jumper Description Default Setting
JBT1 CMOS Clear Open (Normal)
JPSAS1 SAS HDD Enable/Disable Pins 1-2 (Enabled) (Default)
JPS1 SAS 3.0 Enable/Disable Pins 1-2 (Enabled)
JPG1 VGA Enable/Disable Pins 1-2 (Enabled)
JPME2 ME Manufacturing Mode Pins 1-2 (Normal)
JWD1 Watch Dog Timer Pins 1-2 (Reset)
LED Description Status
DLE1 PCI-E 3.0 M.2 LED Blinking Green: Device Working
LEDBMC BMC Heartbeat LED Blinking Green: BMC Normal
LEDPWR Onboard Power LED Solid Green: Power On
LEDSAS SAS Activity LED Blinking Green: SAS Active
Solid Red: SAS Error
UID LED Rear UID LED Blue On: Unit Identied
Connector Description
BT1 Onboard Battery
COM1, COM2 COM Port, COM Header
FAN1 ~ FAN5, FANA ~ FANC CPU/System Fan Headers (FAN1: CPU Fan)
IPMI_LAN Dedicated IPMI LAN Port
I-SATA0~3, I-SATA4~7 Intel® PCH SATA 3.0 Ports (with RAID 0, 1, 5, 10)
JD1 Power LED/Speaker Header (Pins 1-3: Power LED, Pins 4-7: Speaker)
JF1 Front Control Panel Header
JIPMB1 4-pin BMC External I 2C Header (for an IPMI Card)
JL1 Chassis Intrusion Header
JNVI2C1 NVMe I2C Header
JNVME1, JNVME2 NVM Express (NVMe) PCI-Express 3.0 X4 Ports
JOH1 Overheat LED Indicator
JPI 2C1 Power I 2C System Management Bus (SMB) Header
JPWR1 8-pin 12V CPU Power Connector
JPWR2 24-pin ATX Power Connectors
JRK1 Intel RAID Key Header
JSD1, JSD2 SATA DOM Power Connectors
JSTBY1 Standby Power Header
JTPM1 Trusted Platform Module/Port 80 Connector
JVRM1 VRM SMBus Header (for programming use)
15
Chapter 1: Introduction
Connector Description
LAN3, LAN4 Dual 10G BASE-T Ports
L-SAS0~7 Eight SAS 3.0 Ports
M.2 Slot M.2 PCI-E 3.0 x4 Slot (Supports M-Key 2280)
S-SATA0, S-SATA1 SATA 3.0 Ports with SATA DOM Power
S-SGPIO1 Serial Link General Purpose I/O Connection Header
SLOT2 PCH PCI-E 3.0 x4 (in x8) Slot
SLOT3 CPU PCI-E 3.0 x8 Slot
SLOT5, SLOT6 CPU PCI-E 3.0 x8/x16 Slot (Supports Auto Switch)
SP1 Internal Speaker/Buzzer
UID SW Unit Identier (UID) Switch
USB0/1 Back Panel Universal Serial Bus (USB) 2.0 Ports
USB2/3, USB4/5, USB6/7 Front Accessible USB 2.0 Headers
USB8 USB 3.0 Type-A Header
USB9/10 Back Panel USB 3.0 Ports
USB11/12 Front Accessible USB 3.0 Header
VGA VGA Port
16
SuperStorageSystem 5049P-E1CTR36L User's Manual
Figure 1-5. Intel C622 Chipset: System Block Diagram
Note: This is a general block diagram and may not exactly represent the features on your
motherboard. See the System Specications appendix for the actual specications of your
motherboard.
SPI
L 3 AN
RGRMII
PCI-E X1 G2
USB 2.0
Intel
PCH
USB 2.0
USB
R E-VB-CGTL8211
R 5J4
ESPI
T Sensoremp
EMC1402-1 *2 at diff SMBUS
USB 3.0
USB
SPI
AST 0250
BMC
COM1
C toronnec COM2
H derea
VGA CONN
BMC B t hoo Flas
DDR4
SLOT 3
5+1 PHASE
205W
VR13
#C-1
#B-1
#A-2
#A-1
PCI-E X8 G3
DMI3
SNB CORE
DDR-IV
SLOT 5
PCI-E X8
PCI-E X16
SLOT 6
PCI-E X8 G3
VCCP0 12v
VCCP0
PECI:30
SOCKET ID:0
ESPI
H derea
PCI-E X8
#F-1
#E-1
#D-2
#D-1
PCI-E X8
USB 2.0
USB
USB
USB
X ( G)557 10
LAN
RMII/NCSI
KR
M.2 SSD
PCI-E X4 G3
PCI-E X16 G3 (X8 option)
6.0 Gb/S
#1
#0
sSATA
6.0 Gb/S
#1
#0
SATA
#3
#2
#4#5
#6
#7
Debug Card
TPM HE ERAD BIOS
Switch
SPI
SPI (Reserved)
MINI SAS HD
MINI SAS HD
LSI SAS3008
PCI-E X8 Gen3
PCI-E X4 in X8
PCI-E X4 G3
Oc k1ulin
Oc k2ulin
CS ( G)4227 10
LAN
SP+ X2
R X2J45
PCI-E X4 Gen3
PCI-E X4 Gen3
SWITCH
SLOT 2
nCTF only
nCTPF only
2133/2666
DDRIV
#A-1
2133/2666
DDRIV
#8~11
Uplink
#0~3
KR
#6 USB2.0
#5
USB2.0 #2,3
USB2.0 #4,5
USB2.0 #0,1
USB2.0 #10,11
SATA-DOM
Front USB2.0 x 6
Rear USB2.0 x 2
Front USB3.0 x 2
Type A USB3.0
Rear USB3.0 x 2
FRONT PANEL
SYSTEM POWER
CTRL
FAN SPEED
#2C #1C
#1A
#1B #2A DMI3 #3A #3C
Chapter 2: Server Installation
17
Chapter 2
Server Installation
2.1 Overview
This chapter provides advice and instructions for mounting your system in a server rack.
If your system is not already fully integrated with processors, system memory etc., refer to
Chapter 4 for details on installing those specic components.
Caution: Electrostatic Discharge (ESD) can damage electronic components. To prevent such
damage to PCBs (printed circuit boards), it is important to use a grounded wrist strap, handle
all PCBs by their edges and keep them in anti-static bags when not in use.
2.2 Preparing for Setup
The box in which the system was shipped should include the rackmount hardware needed to
install it into the rack. Please read this section in its entirety before you begin the installation.
Choosing a Setup Location
• The system should be situated in a clean, dust-free area that is well ventilated. Avoid areas
where heat, electrical noise and electromagnetic elds are generated.
• Leave enough clearance in front of the rack so that you can open the front door completely
(~25 inches) and approximately 30 inches of clearance in the back of the rack to allow
sufcient space for airow and access when servicing.
• This product should be installed only in a Restricted Access Location (dedicated equipment
rooms, service closets, etc.).
• This product is not suitable for use with visual display workplace devices according to §2
of the German Ordinance for Work with Visual Display Units.
Rack Precautions
• Ensure that the leveling jacks on the bottom of the rack are extended to the oor so that
the full weight of the rack rests on them.
18
SuperStorageSystem 5049P-E1CTR36L User's Manual
• In single rack installations, stabilizers should be attached to the rack. In multiple rack in-
stallations, the racks should be coupled together.
• Always make sure the rack is stable before extending a server or other component from
the rack.
• You should extend only one server or component at a time - extending two or more simul-
taneously may cause the rack to become unstable.
Server Precautions
• Review the electrical and general safety precautions in Appendix B.
• Determine the placement of each component in the rack you install the rails.before
• Install the heaviest server components at the bottom of the rack rst and then work your
way up.
• Use a regulating uninterruptible power supply (UPS) to protect the server from power
surges and voltage spikes and to keep your system operating in case of a power failure.
• Allow any drives and power supply modules to cool before touching them.
• When not servicing, always keep the front door of the rack and all covers/panels on the
servers closed to maintain proper cooling.
Rack Mounting Considerations
Ambient Operating Temperature
If installed in a closed or multi-unit rack assembly, the ambient operating temperature of
the rack environment may be greater than the room's ambient temperature. Therefore,
consideration should be given to installing the equipment in an environment compatible with
the manufacturer’s maximum rated ambient temperature (TMRA).
Airow
Equipment should be mounted into a rack so that the amount of airow required for safe
operation is not compromised.
Mechanical Loading
Equipment should be mounted into a rack so that a hazardous condition does not arise due
to uneven mechanical loading.
Chapter 2: Server Installation
19
Circuit Overloading
Consideration should be given to the connection of the equipment to the power supply circuitry
and the effect that any possible overloading of circuits might have on overcurrent protection
and power supply wiring. Appropriate consideration of equipment nameplate ratings should
be used when addressing this concern.
Reliable Ground
A reliable ground must be maintained at all times. To ensure this, the rack itself should be
grounded. Particular attention should be given to power supply connections other than the
direct connections to the branch circuit (i.e. the use of power strips, etc.).
To prevent bodily injury when mounting or servicing this unit in a rack, you must take
special precautions to ensure that the system remains stable. The following guidelines
are provided to ensure your safety:
• This unit should be mounted at the bottom of the rack if it is the only unit in the rack.
• When mounting this unit in a partially lled rack, load the rack from the bottom to the top
with the heaviest component at the bottom of the rack.
• If the rack is provided with stabilizing devices, install the stabilizers before mounting or
servicing the unit in the rack.
Warning: do not pick up the server with the front handles. They are designed to pull
the system from a rack only.
Slide rail mounted equipment is not to be used as a shelf or a work space.
20
SuperStorageSystem 5049P-E1CTR36L User's Manual
Note: Both front chassis rails and the rack rails have a locking tab, which serves two functions.
First, it locks the server into place when installed and pushed fully into the rack (its normal
operating position. In addition, these tabs lock the server in place when fully extended from
the rack. This prevents the server from coming completely out of the rack when pulled out
for servicing.
Figure 2-1. Identifying the Rail Sections
2.3 Installing the System into a Rack
This section provides information on installing the SC847BE1C chassis into a rack unit with
the rails provided. There are a variety of rack units on the market, which may mean the
assembly procedure will differ slightly. You should also refer to the installation instructions
that came with the rack unit you are using.
Identifying the Sections of the Rack Rails
The 5049P-E1CTR36L includes a rack rail assembly in the rack mounting kit. Each assembly
consists of three sections: An inner chassis rail which secures directly to the chassis, an
outer rail that secures to the rack, and a middle rail which extends from the outer rail. These
assemblies are specically designed for the left and right side of the chassis.
Installing the Inner Rails
1. Place the inner rails on the side of the chassis aligning the hooks of the chassis with the
inner rail holes. Make sure that the rail faces "outward" so that it will t with the rack's
mounting bracket.
2. Slide the rail toward the front of the chassis.
3. Secure the rail to the chassis with four screws as illustrated.
4. Repeat steps 1-3 for the other inner rack rail.
Inner Rail
Rail Assembly
(Shown with Rails
Retracted)
This Side Faces
Outward
Locking Tab
Middle Rail
Outer Rail
Chapter 2: Server Installation
21
Figure 2-2. Extending and Releasing the Inner Rails
Warning: Stability hazard. The rack stabilizing mechanism must be in place, or the
rack must be bolted to the oor before you slide the unit out for servicing. Failure to
stabilize the rack can cause the rack to tip over.
Releasing the Inner Rails
Follow the steps below to release the inner rails from the outer rails.
Installing the Inner Rails from the Outer Rails
1. Identify the left and right outer rail assemblies as described on the previous page.
2. Pull the inner rail out of the outer rail until it is fully extended as illustrated below.
3. Press the locking tab down to release the inner rail.
4. Pull the inner rail all the way out.
5. Repeat steps 1-3 for the second outer rail.
1
3
4
2
22
SuperStorageSystem 5049P-E1CTR36L User's Manual
Warning: When initially installing the server to a rack, test that the rail locking tabs
engage to prevent the server from being overextended. Have a rack lift in place as a
precaution in case the test fails.
Warning: In any instance of pulling the system from the rack, always use a rack lift
and follow all associated safety precautions.
Figure 2-3. Installing the Server into a Rack
Installing The Inner Rails on the Chassis
Installing the Inner Rails
1. Conrm that the left and right inner rails have been correctly identied.
2. Place the inner rail rmly against the side of the chassis, aligning the hooks on the side
of the chassis with the holes in the inner rail.
3. Slide the inner rail forward toward the front of the chassis until the rail clicks into the
locked position, which secures the inner rail to the chassis.
4. Secure the inner rail to the chassis with the screws provided.
5. Repeat steps 1 through 4 above for the other inner rail.
Note: Chassis pictured may vary slightly from the 5049P-E1CTR36L system chassis.
Inner Rails
4
4
3
2
Chapter 2: Server Installation
23
Figure 2-4. Extending and Releasing the Outer Rails
Installing the Outer Rails on the Rack
Installing the Outer Rails
1. Press upward on the locking tab at the rear end of the middle rail.
2. Push the middle rail back into the outer rail.
3. Hang the hooks of the front of the outer rail onto the slots on the front of the rack. If
necessary, use screws to secure the outer rails to the rack, as illustrated above.
4. Pull out the rear of the outer rail, adjusting the length until it ts within the posts of the
rack.
5. Hang the hooks of the rear portion of the outer rail onto the slots on the rear of the rack.
If necessary, use screws to secure the rear of the outer rail to the rear of the rack.
6. Repeat steps 1-5 for the remaining outer rail.
7. Pull out the middle rail until it locks to install the server.
1
4
3
2
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SuperStorageSystem 5049P-E1CTR36L User's Manual
Chapter 3
Maintenance and Component Installation
This chapter provides instructions on installing and replacing main system components. To
prevent compatibility issues, only use components that match the specications and/or part
numbers given.
Installation or replacement of most components require that power rst be removed from the
system. Please follow the procedures given in each section.
3.1 Removing Power
Use the following procedure to ensure that power has been removed from the system. This
step is necessary when removing or installing non hot-swap components or when replacing
a non-redundant power supply.
1. Use the operating system to power down the system.
2. After the system has completely shut-down, disconnect the AC power cord(s) from the
power strip or outlet. (If your system has more than one power supply, remove the AC
power cords from all power supply modules.)
3. Disconnect the power cord(s) from the power supply module(s).
3.2 Accessing the System
The SC847BE1C-R1K23LPB features a removable top cover, which allows easy access to
the inside of the chassis.
Removing the Top Cover
1. Remove power from the system as described in Section 3.1.
2. Remove the screws securing the cover to the chassis.
3. Lift the cover up and off the chassis.
Warning: Except for short periods of time, do not operate the server without the cover in place.
The chassis cover must be in place to allow for proper airow and to prevent overheating.
26
Chapter 3: Maintenance and Component Installation
Figure 3-1. Removing the Chassis Cover
3.3 Motherboard Components
Processor and Heatsink Installation
Follow the procedures in this section to install a processor (CPU) and heatsink onto the
motherboard. Improper CPU installation or socket misalignment can cause serious damage
to the CPU or motherboard which may require RMA repairs.
Notes:
• All power should be off, as described in Section 3.1, before installing the processors.
• When handling the processor package, avoid placing direct pressure on the label area of
the CPU or socket.
• The processor and heatsink should be assembled together rst to form the Processor
Heatsink Module (PHM), and then install the entire PHM into the CPU socket.
• When receiving a motherboard without a processor pre-installed, make sure that the plastic
CPU socket cap is in place and none of the socket pins are bent; otherwise, contact your
retailer immediately.
• Refer to the Supermicro website for updates on CPU support.
3
2
2
2
2
27
SuperStorageSystem 5049P-E1CTR36L User's Manual
Note: All graphics, drawings, and pictures shown in this manual are for illustration only. The
components that came with your server may or may not look exactly the same as those
shown in this manual.
The Xeon Scalable Processor
Figure 3-2. Xeon Scalable Processors
Overview of the Processor Socket Assembly
The processor socket assembly contains 1) the Intel processor, 2) the narrow processor clip,
3) the dust cover, and 4) the CPU socket.
1. Processor
2. Narrow processor clip (the plastic processor package carrier used for the CPU)
(The Processor)
28
Chapter 3: Maintenance and Component Installation
3. Dust Cover
4. CPU Socket
Note: Be sure to cover the CPU socket with the dust cover when the CPU is not installed.
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SuperStorageSystem 5049P-E1CTR36L User's Manual
Overview of the Processor Heatsink Module (PHM)
The Processor Heatsink Module (PHM) contains 1) a heatsink, 2) a narrow processor clip,
and 3) the processor.
1. Heatsink
2. Narrow processor clip
3. Processor
30
Chapter 3: Maintenance and Component Installation
Assembling the Processor Package
Attach the processor to the narrow processor clip to create the processor package.
Caution: Exercise extreme caution when handling the CPU. Do not touch the underside
of the CPU to avoid damaging it. Be sure to wear ESD gloves when handling components.
1. Locate pin 1 (A), which is the triangle on the top of the narrow processor clip. Also
locate notch B and notch C on the processor clip.
2. Locate pin 1 (A), which is the triangle on the underside of the CPU. Also, locate notch B
and notch C on the CPU as shown below.
3. Align pin 1 of the CPU with pin 1 of the narrow processor clip. Once they are aligned,
carefully insert the CPU into the processor clip by sliding notch B of the CPU into notch
B of the processor clip, and sliding notch C of the CPU into notch C of the processor
clip.
4. Examine all corners of the CPU to ensure that it is properly seated and secure on the
processor clip.
The processor package assembly is created.
A
B
C
Allow Notch C to
latch on to CPU
Allow Notch B to
latch on to CPU
A
A
B
B
C
C
Pin 1
Align CPU Pin 1
CPU (Upside Down)
w/CPU LGA Lands up
CPU/Heatsink Package
(Upside Down)
Align Notch C of the CPU
and Notch C of the Processor Clip
Align Notch B of the CPU
and Notch B of the Processor Clip
Processor Package Assembly for the non-F Model Processors
(with CPU mounted on the Processor Clip)
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SuperStorageSystem 5049P-E1CTR36L User's Manual
33
SuperStorageSystem 5049P-E1CTR36L User's Manual
Removing the Processor Heatsink Module from the Motherboard
Before removing the processor heatsink module (PHM), power down the server as described
in Section 3.1.
1. Using a T30 Torx-bit screwdriver, turn the screws on the PHM counterclockwise to
loosen them from the socket, starting with screw marked #4, in the sequence of 4, 3, 2,
1.
2. After all four screws are removed, wiggle the PHM gently and pull it up to remove it from
the socket.
Printed Triangle on Motherboard
Removing the screws in
the sequence of 4, 3, 2, 1
After removing the screws,
lift the Processor Heatsink
Module off the CPU socket.
CPU Socket
#1
#2
#3
#4
34
Chapter 3: Maintenance and Component Installation
Type
RDIMM
RDIMM
RDIMM
RDIMM
RDIMM
3DS
LRDIMM
3DS
LRDIMM
Ranks
Per DIMM
and Data
Width
DIMM Capacity
(GB)
Speed (MT/s); Voltage (V);
Slot Per Channel (SPC)
and DIMM Per Channel (DPC)
1 Slot Per
Channel
2 Slots Per Channel
DRAM Density
4Gb 8Gb 1.2V 1.2V 1.2V
1DPC 1DPC 2DPC
8GB
8GB
16GB
16GB
16GB
8GB
4GB
32GB
32GB 64GB
SRx4
SRx8
DRx8
DRx4
QRx4
2666 2666 2666
N/A
N/A
N/A
N/A
QRx4
QRx4
8Rx4
8Rx4
2H-64GB
4H-128GB
4H-128GB
2H-64GB
Notes:
• The blue slots must be populated rst.
• Only populate DIMMA2 and DIMMD2 if the extra memory support is needed.
• Always use DDR4 DIMM modules of the same type, size and speed.
• Mixed DIMM speeds can be installed. However, all DIMMs will run at the speed of the
slowest DIMM.
• The motherboard will support odd-numbered modules (1 or 3 modules installed). However,
to achieve the best memory performance, a balanced memory population is recommended.
Installing Memory
Memory Support
The X11SPH-NCTF supports up to 256GB of RDIMM, 512GB of LRDIMM, or 1TB of 3DS
LRDMIMM DDR4 (288-pin) ECC memory with speeds of up to 2666MHz in eight memory
slots. Refer to the table below for additional memory information.
35
SuperStorageSystem 5049P-E1CTR36L User's Manual
DIMM Installation
1. Insert DIMM modules in the following order: DIMMA1, DIMMD1, DIMMB1, DIMME1,
DIMMC1, DIMMF1, DIMMA2, DIMMD2. For the system to work properly, please use
memory modules of the same type and speed.
2. Push the release tabs outwards on both ends of the DIMM slot to unlock it.
3. Align the key of the DIMM module with the receptive point on the memory slot.
4. Align the notches on both ends of the module against the receptive points on the ends
of the slot.
5. Use two thumbs together to press the notches on both ends of the module straight down
into the slot until the module snaps into place.
6. Press the release tabs to the lock positions to secure the DIMM module into the slot.
DIMM Removal
Reverse the steps above to remove the DIMM modules from the motherboard.
Release Tabs
Notches
Press both notches
straight down into
the memory slot.
Figure 3-2. Installing DIMMs
Note: Visit the product page on the Supermicro website for possible updates to memory
support (www.supermicro.com).
36
Chapter 3: Maintenance and Component Installation
Installing PCI Expansion Cards
The 5049P-E1CTR36L can accommodate up to four PCI expansion cards in the PCI
expansion slots on the serverboard.
Installing an Add-on Card
1. Begin by removing the shield for the PCI slot you wish to populate. Make sure that the
card you are installing is supported by the slot (see table below).
2. Fully seat the card into the slot, pushing down with your thumbs evenly on both sides of
the card.
3. Finish by using a screw to secure the top of the card shield to the chassis. The PCI
slot shields protect the serverboard and its components from EMI and aid in proper
ventilation, so make sure there is always a shield covering each unused slot.
Motherboard Battery
The motherboard uses non-volatile memory to retain system information when system power
is removed. This memory is powered by a lithium battery residing on the motherboard.
Replacing the Battery
Begin by removing power from the system as described in section 3.1.
1. Push aside the small clamp that covers the edge of the battery. When the battery is
released, lift it out of the holder.
2. To insert a new battery, slide one edge under the lip of the holder with the positive (+)
side facing up. Then push the other side down until the clamp snaps over it.
Note: Handle used batteries carefully. Do not damage the battery in any way; a damaged
battery may release hazardous materials into the environment. Do not discard a used battery
in the garbage or a public landll. Please comply with the regulations set up by your local
hazardous waste management agency to dispose of your used battery properly.
Warning: There is a danger of explosion if the onboard battery is installed upside down (which
reverses its polarities). This battery must be replaced only with the same or an equivalent type
recommended by the manufacturer (CR2032).
Figure 3-3. Installing the Onboard Battery
37
SuperStorageSystem 5049P-E1CTR36L User's Manual
Figure 3-4. Removing a Hard Drive Carrier
3.4 Chassis Components
Hard Drives
Your system may or may not have come with hard drives installed. Up to thirty-six 3.5" hard
drives are supported by the chassis (24 in front and 12 in the rear of the chassis).
The hard drives are mounted in drive carriers to simplify their installation and removal from
the chassis. (Both procedures may be done without removing power from the system.)
Removing a Hot-Swap Drive Carrier
1. Push the release button on the carrier.
2. Swing the handle fully out.
3. Grasp the handle and use it to pull the drive carrier out of its bay.
Mounting a Drive in a Drive Carrier
1. To add a new drive, install it into the carrier with the printed circuit board side facing
down so that the mounting holes align with those in the carrier.
2. Secure the drive to the carrier with the screws provided, then push the carrier
completely into the drive bay. You should hear a *click* when the drive is fully inserted.
This indicates that the carrier has been fully seated and connected to the midplane,
which automatically makes the power and logic connections to the hard drive.
Note: Enterprise level hard disk drives are recommended for use in Supermicro chassis and
servers. For information on recommended HDDs, visit the Supermicro website at http://www.
supermicro.com/products/nfo/storage.cfm
38
Chapter 3: Maintenance and Component Installation
Figure 3-5. Mounting a Drive in a Carrier
Hard Drive Backplane
The hard drives plug into a backplane that provides power, drive ID and bus termination.
The supplied RAID controller provides hot-swap capability with drive state indication. The
backplane is already precongured, so no jumper or switch congurations are required.
Caution: Except for short periods of time, do not operate the server without the chassis
cover in place. The cover must be in place to allow proper airow and prevent overheating.
Installing Optional Fixed Hard Drives
Optional brackets for the SC847BE1C chassis may be used to install either one 3.5" xed
hard drive or two 2.5" xed hard drives. These brackets install under the serverboard tray.
Each chassis can accommodate up to two of these brackets to support up to two 3.5" hard
drives or up to four 2.5" hard drives (tray p/n: MCP-220-84701-0N).
Installing a 3.5" Hard Drive into the Bracket
1. Align the four washers and screws with the holes in the hard drive and the holes in the
bracket.
2. Secure the hard drive to the bracket using the screws and washers provided.
3. See the instructions below for Installing the bracket onto the chassis.
Installing Two 2.5" Hard Drives into the Bracket
1. Align the eight external tooth washers and eight screws with the holes in the hard drive
and the holes in the bracket.
2. Secure the hard drive to the bracket using the screws and washers provided.
3. See the instructions below for installing the bracket onto the chassis.
Installing the Bracket onto the Chassis
1. Align the holes in the bracket with the chassis standoffs.
2. Secure the bracket using the screw provided.
39
SuperStorageSystem 5049P-E1CTR36L User's Manual
System Cooling
Seven 8-cm hot-swap fans provide the cooling for the system. It is very important that the
chassis top cover is properly installed and making a good seal in order for the cooling air to
circulate properly through the chassis and cool the components.
System Fan Failure
Fan speed is controlled by system temperature via IPMI. If a fan fails, the remaining fans
will ramp up to full speed. Replace any failed fan at your earliest convenience with the same
type and model (the system can continue to run with a failed fan).
Installing Fans
1. Depress the tab on the side of the fan to unlock and remove the fan along with its
housing. The fan's power connections will automatically detach.
2. System power does not need to be shut down since the fans are hot-pluggable.
3. Replace the failed fan with an identical 8-cm, 12 volt fan (available from Supermicro).
4. Position the new fan into the space vacated by the failed fan previously removed. A
"click" can be heard when the fan is fully installed in place and the power connections
are made.
5. If the system power is on, the hot-plug feature will cause the fan to start immediately
upon being connected to its header on the serverboard.
Figure 3-6. Installing Optional Fixed Hard Drives
Installing One
3.5" HDD
Installing Two
2.5" HDDs
Installing the Bracket
onto the Chassis
40
Chapter 3: Maintenance and Component Installation
Figure 3-7. Installing a System Fan
Air Shroud
Under most circumstances you will not need to remove the air shroud to perform any service
on the system. However, if you need to temporarily remove it (the air shroud should always
be in place when the system is operating), please follow this procedure.
Air shrouds concentrate airow to maximize fan efciency. The SC847 chassis air shroud
does not require screws to set up
Installing the Air Shroud
1. Conrm that your air shroud matches your chassis model.
2. Place the air shroud in the chassis. The air shroud ts behind the two fans closest to the
power supply.
44
SuperStorageSystem 5049P-E1CTR36L User's Manual
4.2 Headers and Connectors
Fan Headers
There are eight 4-pin fan headers on the motherboard. These are 4-pin fan headers; pins 1-3
are backward compatible with traditional 3-pin fans. The onboard fan speeds are controlled
by Thermal Management via IPMI. When using Thermal Management setting, please use all
3-pin fans or all 4-pin fans.
Required Connection
8-pin Power
Pin Denitions
Pin# Denition
1 - 4 Ground
5 - 8 P12V (12V Power)
8-Pin Power Connector
JPWR1 is an 8-pin 12V DC power input for the processors, which must be connected to the
power supply. Refer to the table below for pin denitions..
Fan Header
Pin Denitions
Pin# Denition
1 Ground (Black)
2 2.5A/+12V (Red)
3 Tachometer
4 PWM_Control
SGPIO Header
There is one Serial Link General Purpose Input/Output (S-SGPIO1) header located on the
motherboard. Refer to the table below for pin denitions.
SGPIO Header
Pin Denitions
Pin# Pin#Denition Denition
1 2NC NC
3 4Ground Data
5 6Load Ground
7 8Clock NC
NC = No Connection
45
Chapter 4: Motherboard Connections
Trusted Platform Module Header
Pin Denitions
Pin# Pin#Denition Denition
1 2+3.3V SPI_CS#
3 4RESET# SPI_MISO
5 6SPI_CLK GND
7 8SPI_MOSI
9 +3.3V Stdby 10 SPI_IRQ#
TPM/Port 80 Header
A Trusted Platform Module (TPM)/Port 80 header is located at JTPM1 to provide TPM support
and Port 80 connection. Use this header to enhance system performance and data security.
Refer to the table below for pin denitions. Please go to the following link for more information
on the TPM: http://www.supermicro.com/manuals/other/TPM.pdf.
Standby Power
The Standby Power header is located at JSTBY1 on the motherboard. You must have a card
with a Standby Power connector and a cable to use this feature. Refer to the table below
for pin denitions.
Standby Power
Pin Denitions
Pin# Denition
1 +5V Standby
2 Ground
3 No Connection
Internal Speaker/Buzzer
The Internal Speaker/Buzzer (SP1) is used to provide audible indications for various beep
codes. Refer to the table below for pin denitions.
Internal Buzzer
Pin Denitions
Pin# Denition
1 Pos (+) Beep In
2 Neg (-) Alarm Speaker
Disk-On-Module Power Connector
Two power connectors for SATA DOM (Disk-On-Module) devices are located at JSD1/JSD2.
Connect appropriate cables here to provide power support for your Serial Link DOM devices.
DOM Power
Pin Denitions
Pin# Denition
1 5V
2 Ground
3 Ground
46
SuperStorageSystem 5049P-E1CTR36L User's Manual
Power SMB (I2C) Header
The Power System Management Bus (I2C) connector (JPI2C1) monitors the power supply,
fan, and system temperatures. Refer to the table below for pin denitions.
Power SMB Header
Pin Denitions
Pin# Denition
1 Clock
2 Data
3 PMBUS_Alert
4 Ground
5 +3.3V
4-pin BMC External I2C Header
A System Management Bus header for IPMI 2.0 is located at JIPMB1. Connect the appropriate
cable here to use the IPMB I2C connection on your system. Refer to the table below for pin
denitions.
External I2C Header
Pin Denitions
Pin# Denition
1 Data
2 Ground
3 Clock
4 No Connection
Chassis Intrusion
A Chassis Intrusion header is located at JL1 on the motherboard. Attach the appropriate cable
from the chassis to inform you of a chassis intrusion when the chassis is opened. Refer to
the table below for pin denitions.
Chassis Intrusion
Pin Denitions
Pin# Denition
1 Intrusion Input
2 Ground
NVMe I2C Header
Connector JNVI2C1 is a management header for the Supermicro AOC NVMe PCI-E peripheral
card. Please connect the I2C cable to this connector.
VRM SMBus Header
JVRM1 is a voltage regulator module (VRM) SMBus header. Use this header to program the
CPU and memory VRM controllers.
47
Chapter 4: Motherboard Connections
Power LED/Speaker
Pins 1-3 of JD1 are used for power LED indication, and pins 4-7 are for the speaker. Please
note that the speaker connector pins (4-7) are used with an external speaker. If you wish to
use the onboard speaker, you should close pins 6-7 with a cap. Refer to the tables below
for pin denitions.
PWR LED Connector
Pin Denitions
Pin# Signal
1 JD1_PIN1
2 FP_PWR_LED
3 FP_PWR_LED
Speaker Connector
Pin Denitions
Pin# Signal
4 P5V
5 Key
6 R_SPKPIN_N
7 R_SPKPIN
Overheat/Fan Fail LED Header
The JOH1 header is used to connect an LED indicator to provide warnings of chassis
overheating and fan failure. This LED will blink when a fan failure occurs. Refer to the tables
below for pin denitions.
Overheat LED header
Status
State Denition
Solid Overheat
Blinking Fan Fail
Overheat LED
Pin Denitions
Pin# Signal
1
Pull high to +3.3V
power through 330-ohm
resistor
2 OH Active
SATA and SAS Ports
The X11SPH-NCTF has eight SATA 3.0 ports (I-SATA0~3, I-SATA4~7) supported by the
Intel PCH C622 chipset. These SATA ports support RAID 0, 1, 5, and 10. There are also two
S-SATA ports (S-SATA0, S-SATA1) that include SATA DOM power. SATA ports provide serial-
link signal connections, which are faster than the connections of Parallel ATA. In addition,
the X11SPH-NCTF has eight SAS 3.0 ports (L-SAS0~7) that are supported by the LSI 3008
controller. Refer to the table below for pin denitions.
Note: For more information on the SATA HostRAID conguration, please refer to the Intel
SATA HostRAID user's guide posted on our website at http://www.supermicro.com.
NVMe Slots
Two NVM Express slots are located at JNVME1 and JNVME2 on the motherboard. Use these
slots to attach high-speed PCI-E storage devices.
48
SuperStorageSystem 5049P-E1CTR36L User's Manual
Intel RAID Key Header
The JRK1 header allows the user to enable RAID functions. Refer to the table below for pin
denitions.
Overheat LED
Pin Denitions
Pin# Dention
1 GND
2 PU 3.3V Stdby
3GND
4PCH RAID KEY
Figure 4-1. JF1: Control Panel Pins
Control Panel
JF1 contains header pins for various control panel connections. See the gure below for the
pin locations and denitions of the control panel buttons and LED indicators.
All JF1 wires have been bundled into a single cable to simplify this connection. Make sure
the red wire plugs into pin 1 as marked on the motherboard. The other end connects to the
control panel PCB board.
Power Button
UID LED
NIC1 Active LED
Reset Button
HDD LED
PWR LED
Reset
PWR
3.3V Stby
3.3V Stby
19
X
Ground
X
3.3V Stby
20
12
Ground
NIC2 Active LED
NMI
3.3V
3.3V
Power Fail LED
OH/Fan Fail LED
Ground
49
Chapter 4: Motherboard Connections
Reset Button
Pin Denitions (JF1)
Pins Denition
3 Reset
4 Ground
Power Button
Pin Denitions (JF1)
Pins Denition
1 Signal
2 Ground
Power Button
The Power Button connection is located on pins 1 and 2 of JF1. Momentarily contacting both
pins will power on/off the system. This button can also be congured to function as a suspend
button (with a setting in the BIOS - see Chapter 4). To turn off the power when the system
is in suspend mode, press the button for 4 seconds or longer. Refer to the table below for
pin denitions.
Reset Button
The Reset Button connection is located on pins 3 and 4 of JF1. Attach it to a hardware reset
switch on the computer case to reset the system. Refer to the table below for pin denitions.
Overheat (OH)/Fan Fail
Connect an LED cable to pins 7 and 8 of the Front Control Panel to use the Overheat/Fan
Fail LED connections. The LED on pin 8 provides warnings of overheat or fan failure. Refer
to the tables below for pin denitions.
OH/Fan Fail Indicator
Status
State Denition
Off Normal
On Overheat
Flashing Fan Fail
OH/Fan Fail LED
Pin Denitions (JF1)
Pin# Denition
7 Blue LED
8 OH/Fan Fail LED
Power Fail LED
The Power Fail LED connection is located on pins 5 and 6 of JF1. Refer to the table below
for pin denitions.
Power Fail LED
Pin Denitions (JF1)
Pin# Denition
5 3.3V
6 PWR Supply Fail
50
SuperStorageSystem 5049P-E1CTR36L User's Manual
NIC1/NIC2 (LAN1/LAN2 or LAN3/LAN4)
The Network Interface Controller (NIC) LED connection for LAN port 1 or port 3 is located on
pins 11 and 12 of JF1, while LAN port 2 or port 4 is on pins 9 and 10. Attach the NIC LED
cables here to display network activity. Refer to the table below for pin denitions.
LAN1/LAN2 or
LAN3/LAN4 LED
Pin Denitions (JF1)
Pin# Denition
9/11 Vcc
10/12 NIC2 Active LED/
NIC1 Active LED
HDD LED
The HDD LED connection is located on pins 13 and 14 of JF1. Attach a cable to pin 14 to
show hard drive activity status. Refer to the table below for pin denitions.
HDD LED
Pin Denitions (JF1)
Pins Denition
13 3.3V Stdby
14 HDD Active
Power LED
The Power LED connection is located on pins 15 and 16 of JF1. Refer to the table below
for pin denitions.
Power LED
Pin Denitions (JF1)
Pins Denition
15 3.3V
16 PWR LED
NMI Button
The non-maskable interrupt (NMI) button header is located on pins 19 and 20 of JF1. Refer
to the table below for pin denitions.
NMI Button
Pin Denitions (JF1)
Pins Denition
19 Control
20 Ground
52
SuperStorageSystem 5049P-E1CTR36L User's Manual
Power LED
The Power LED connection is located on pins 15 and 16 of JF1.
Power LED
Pin Denitions (JF1)
Pin# Denition
15 3.3V
16 Power LED
NMI Button
The non-maskable interrupt button header is located on pins 19 and 20 of JF1.
NMI Button
Pin Denitions (JF1)
Pin# Denition
19 Control
20 Ground
53
Chapter 4: Motherboard Connections
4.3 Ports
Figure 4-2. Rear I/O Ports
VGA Port
A video (VGA) port is located next to JLAN1 on the I/O back panel. Refer to the board layout
below for the location.
COM Ports
Two COM connections (COM1 and COM2) are located on the motherboard. COM1 is located
on the I/O back panel. COM2 is located next to PCI-E Slot 2.
78
6
5
4
3
2
1
# #Description Description
1 6COM Port 1 USB9 Port (USB3.0)
2 7Dedicated IPMI LAN LAN1/LAN2 Ports
3 8USB1 Port (USB2.0) VGA Port
4 9USB0 Port (USB2.0) UID Switch
5 USB10 Port (USB3.0)
LAN Ports
Two 10G Ethernet ports (LAN1/2) are located on the I/O back panel. In addition, a dedicated
IPMI LAN is located above the USB0/1 ports on the back panel. Please refer to the LED
Indicator section for LAN LED information.
54
SuperStorageSystem 5049P-E1CTR36L User's Manual
Universal Serial Bus (USB) Ports
There are two USB 2.0 ports (USB0/1) and two USB 3.0 ports (USB9/10) located on the
I/O back panel. The motherboard also has three front accessible USB 2.0 headers (USB2/3,
USB4/5, and USB6/7) and one front accessible USB 3.0 header (USB11/12). The USB8
header is USB 3.0 Type-A. The onboard headers can be used to provide front side USB
access with a cable (not included).
Back Panel USB 9/10 (3.0)
Pin Denitions
Pin# Pin#Denition Denition
A1 VBUS B1 Power
A2 D- B2 USB_N
A3 D+ B3 USB_P
A4 GND B4 GND
A5 Stda_SSRX- B5 USB3_RN
A6 Stda_SSRX+ B6 USB3_RP
A7 GND B7 GND
A8 Stda_SSTX- B8 USB3_TN
A9 Stda_SSTX+ B9 USB3_TP
Back Panel USB 0/1 (2.0)
Pin Denitions
Pin# Pin#Denition Denition
1 5+5V +5V
2 6USB_N USB_N
3 7USB_P USB_P
4 8Ground Ground
Front Panel USB 2/3, 4/5, and 6/7 (2.0)
Pin Denitions
Pin# Pin#Denition Denition
1 2+5V +5V
3 4USB_N USB_N
5 6USB_P USB_P
7 8Ground Ground
9 Key 10 NC
Front Panel USB 11/12 (3.0)
Pin Denitions
Pin# Pin#Denition Denition
1VBUS 19 Power
2Stda_SSRX- 18 USB3_RN
3Stda_SSRX+ 17 USB3_RP
4GND 16 GND
5Stda_SSTX- 15 USB3_TN
6Stda_SSTX+ 14 USB3_TP
7GND 13 GND
8D- 12 USB_N
9D+ USB_P11
10 x
Type A USB 8 (3.0)
Pin Denitions
Pin# Pin#Denition Denition
1 5VBUS SSRX-
2 6USB_N SSRX+
3 7USB_P GND
4 8Ground SSTX-
9 SSTX+
55
Chapter 4: Motherboard Connections
Unit Identier Switch/Rear LED Indicator
A Unit Identier (UID) Switch (UID-SW) and a rear LED Indicator (UID-LED) are located on
the I/O back panel. When the user presses the UID switch, the UID LED indicator will be
turned on. Press the UID switch again to turn off the UID LED. The UID indicator provides
easy identication of a system unit that may be in need of service.
Note: UID can also be triggered via IPMI on the motherboard. For more information on IPMI,
please refer to the IPMI User's Guide posted on our website at http://www.supermicro.com.
UID LED
Status
Color/State Status
Blue:
On
Unit Iden-
tied
UID Switch
Pin Denitions
Pin# Denitions
1 Ground
2 Ground
3 Button In
4 Button In
4.4 Jumpers
Explanation of Jumpers
To modify the operation of the motherboard, jumpers are used to choose between optional
settings. Jumpers create shorts between two pins to change the function associated with it.
Pin 1 is identied with a square solder pad on the printed circuit board. See the motherboard
layout page for jumper locations.
Note: On a two-pin jumper, "Closed" means the jumper is on both pins and "Open" indicates
the jumper is either on only one pin or has been completely removed.
Connector
Pins
Jumper
Setting
3 2 1
3 2 1
56
SuperStorageSystem 5049P-E1CTR36L User's Manual
CMOS Clear
JBT1 is used to clear CMOS, which will also clear any passwords. Instead of pins, this jumper
consists of contact pads to prevent accidentally clearing the contents of CMOS.
To Clear CMOS
1. First power down the system and unplug the power cord(s).
2. Remove the cover of the chassis to access the motherboard.
3. Remove the onboard battery from the motherboard.
4. Short the CMOS pads with a metal object such as a small screwdriver for at least four
seconds.
5. Remove the screwdriver (or shorting device).
6. Replace the cover, reconnect the power cord(s) and power on the system.
Notes: Clearing CMOS will also clear all passwords.
Do not use the PW_ON connector to clear CMOS.
JBT1 contact pads
Watch Dog
Watch Dog (JWD1) is a system monitor that can reboot the system when a software
application hangs. Close pins 1-2 to reset the system if an application hangs. Close pins 2-3
to generate a non-maskable interrupt (NMI) signal for the application that hangs. Refer to the
table below for jumper settings. The Watch Dog must also be enabled in the BIOS.
Watch Dog
Jumper Settings
Jumper Setting Denition
Pins 1-2 Reset
Pins 2-3 NMI
Open Disabled
VGA Enable/Disable
Jumper JPG1 allows the user to enable the onboard VGA connector. The default setting is
pins 1-2 to enable the connection. Refer to the table below for jumper settings.
VGA Enable/Disable
Jumper Settings
Jumper Setting Denition
Pins 1-2 Enabled
Pins 2-3 Disabled
57
Chapter 4: Motherboard Connections
ME Manufacturing Mode
Close pins 2-3 of jumper JPME2 to bypass SPI ash security and force the system to operate
in the manufacturing mode, which will allow the user to ash the system rmware from a
host server for system setting modications. Refer to the table below for jumper settings.
The default setting is Normal.
Manufacturing Mode
Jumper Settings
Jumper Setting Denition
Pins 1-2 Normal
Pins 2-3 Manufacturing Mode
SAS HDD
Jumper Settings
Jumper Setting Denition
Pins 1-2 Enabled
Pins 2-3 Disabled
SAS HDD Enable/Disable
JPSAS1 allows you to enable the SAS HDD. See the table below for jumper settings.
SAS Enable/Disable
Jumper Settings
Jumper Setting Denition
Pins 1-2 Enabled
Pins 2-3 Disabled
SAS 3.0 Enable/Disable
JPS1 allows you to enable the onboard SAS 3.0 ports. See the table below for jumper settings.
58
SuperStorageSystem 5049P-E1CTR36L User's Manual
4.5 LED Indicators
LAN LEDs
Four LAN ports (LAN 1 ~ LAN 4) are located on the I/O back panel of the motherboard. Each
Ethernet LAN port has two LEDs. The green LED indicates activity, while the other Link LED
may be green, amber, or off to indicate the speed of the connection. Refer to the tables below
for more information.
LAN Activity LED (Right)
LED State
Color Status Denition
Green Flashing Active
LAN Link LED (Left)
LED State
LED Color Denition
Green 10Gbps
Yellow/Amber 1Gbps
IPMI LAN LEDs
In addition to LAN1 ~ LAN4, an IPMI LAN is also located on the I/O back panel. The amber
LED on the right indicates activity, while the green LED on the left indicates the speed of the
connection. Refer to the table below for more information.
IPMI LAN
Activity LEDLink LED
IPMI LAN LEDs
Color/State Denition
Link (left) Green: Solid
Amber: Solid
100 Mbps
1Gbps
Activity (Right) Amber: Blinking Active
BMC Heartbeat LED
A BMC Heartbeat LED is located at LEDBMC on the motherboard. When LEDBMC is blinking,
the BMC is functioning normally. Refer to the table below for more information.
BMC Heartbeat LED Indicator
LED Color Denition
Green:
Blinking BMC Normal
M.2 LED
An M.2 LED is located at DLE1 on the motherboard. When DLE1 is blinking, M.2 functions
normally. Refer to the table below for more information.
M.2 LED State
LED Color Denition
Green: Blinking Device Working
59
Chapter 4: Motherboard Connections
Onboard Power LED
The Onboard Power LED is located at LEDPWR on the motherboard. When this LED is on,
the system is on. Be sure to turn off the system and unplug the power cord before removing
or installing components. Refer to the table below for more information.
Onboard Power LED Indicator
LED Color Denition
Off
System Off
(power cable not
connected)
Green System On
SAS Activity LED
A SAS Activity LED is located at LEDSAS. When LEDSAS ashes, it indicates activity on a
SAS port.
SAS Activity
LED Indicator
LED Color Denition
Green:
Blinking SAS Active
Red SAS Error
UID LED
LED Indicator
LED Color Denition
Blue: On Unit Identied
Unit ID LED
A rear UID LED indicator (UID-LED) is located near the UID switch on the I/O back panel.
This UID indicator provides easy identication of a system unit that may need service.
Chapter 5: Software
61
5.2 Driver Installation
The Supermicro FTP site contains drivers and utilities for your system at ftp://ftp.supermicro.
com. Some of these must be installed, such as the chipset driver.
After accessing the FTP site, go into the CDR_Images directory and locate the ISO le for
your motherboard. Download this le to create a DVD of the drivers and utilities it contains.
(You may also use a utility to extract the ISO le if preferred.)
After creating a DVD with the ISO les, insert the disk into the DVD drive on your system
and the display shown in Figure 5-1 should appear.
Another option is to go to the Supermicro website at http://www.supermicro.com/products/.
Find the product page for your motherboard here, where you may download individual drivers
and utilities to your hard drive or a USB ash drive and install from there.
Note: To install the Windows OS, please refer to the instructions posted on our website at
http://www.supermicro.com/support/manuals/.
Figure 5-1. Driver & Tool Installation Screen
Note: Click the icons showing a hand writing on paper to view the readme les for each
item. Click the computer icons to the right of these items to install each item (from top to the
bottom) one at a time. After installing each item, you must re-boot the system before
moving on to the next item on the list. The bottom icon with a CD on it allows you to view
the entire contents.
Chapter 5: Software
63
5.4 IPMI
The X11SPH-NCTF supports the Intelligent Platform Management Interface (IPMI). IPMI is
used to provide remote access, monitoring and management. There are several BIOS settings
that are related to IPMI.
For general documentation and information on IPMI, please visit our website at:
http://www.supermicro.com/products/nfo/IPMI.cfm.
64
SuperStorageSystem 5049P-E1CTR36L User's Manual
Chapter 6
BIOS
6.1 Introduction
This chapter describes the AMIBIOS™ Setup utility for the motherboard. The BIOS is stored
on a chip and can be easily upgraded using a ash program.
Note: Due to periodic changes to the BIOS, some settings may have been added
or deleted and might not yet be recorded in this manual. Please refer to the Manual
Download area of our website for any changes to BIOS that may not be reected in
this manual.
Starting the Setup Utility
To enter the BIOS Setup Utility, hit the <Delete> key while the system is booting-up. (In
most cases, the <Delete> key is used to invoke the BIOS setup screen. There are a few
cases when other keys are used, such as <F1>, <F2>, etc.) Each main BIOS menu option
is described in this manual.
The Main BIOS screen has two main frames. The left frame displays all the options that can
be congured. “Grayed-out” options cannot be congured. The right frame displays the key
legend. Above the key legend is an area reserved for a text message. When an option is
selected in the left frame, it is highlighted in white. Often a text message will accompany it.
(Note that BIOS has default text messages built in. We retain the option to include, omit, or
change any of these text messages.) Settings printed in are the default values.Bold
A " " indicates a submenu. Highlighting such an item and pressing the <Enter> key will
open the list of settings within that submenu.
The BIOS setup utility uses a key-based navigation system called hot keys. Most of these
hot keys (<F1>, <F2>, <F3>, <Enter>, <ESC>, <Arrow> keys, etc.) can be used at any time
during the setup navigation process.
66
SuperStorageSystem 5049P-E1CTR36L User's Manual
CPLD Version
This item displays the Complex Programmable Logic Device version.
Memory Information
Total Memory
This item displays the total size of memory available in the system.
Chapter 6: BIOS
67
6.3 Advanced Setup Congurations
Use the arrow keys to select Boot Setup and press <Enter> to access the submenu items.
Warning: Take caution when changing the Advanced settings. An incorrect value, a very high
DRAM frequency, or an incorrect DRAM timing setting may make the system unstable. When
this occurs, revert to default manufacturer settings.
Boot Feature
Quiet Boot
Use this feature to select the screen display between the POST messages and the OEM logo
upon bootup. Select Disabled to display the POST messages. Select Enabled to display the
OEM logo instead of the normal POST messages. The options are Disabled and Enabled.
Option ROM Messages
Use this feature to set the display mode for the Option ROM. Select Keep Current to display
the current AddOn ROM setting. Select Force BIOS to use the Option ROM display set by
the system BIOS. The options are Force BIOS and Keep Current.
Bootup NumLock State
Use this feature to set the Power-on state for the <Numlock> key. The options are On and Off.

Product specificaties

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Model: SuperStorage 5049P-E1CTR36L

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